MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2604841521022162
cnr4.886088488643636
efc0.5933687471915365
fber92.69485473632812
fwhmavg3.8770433333333334
fwhmx3.76018
fwhmy4.15899
fwhmz3.71196
icvscsf0.20816101261274042
icvsgm0.4687940468118374
icvswm0.3230449405754222
inumed1.072716474533081
inurange0.2883013129234313
qi10.0
qi20.003508690176583704
rpvecsf23.729655303968084
rpvegm11.792131809147955
rpvewm19.575199555041113
sizex180
sizey256
sizez256
snrcsf3.0241827441359304
snrgm10.694066976017453
snrtotal12.160289226561673
snrwm22.76261795953164
snrdcsf16.249254440864828
snrdgm32.64870607274378
snrdtotal33.46975292491999
snrdwm51.51129826115136
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.7042222919501611
summarybgmad12.718400001525879
summarybgmean52.81952667236328
summarybgmedian51.94453430175781
summarybgn2709505.0
summarybgp0533.18787384033203
summarybgp9575.64781188964842
summarybgstdv13.191526412963867
summarycsfk-0.02784417927117122
summarycsfmad114.75675201416016
summarycsfmean317.73236083984375
summarycsfmedian315.4526672363281
summarycsfn24373.0
summarycsfp05157.182080078125
summarycsfp95485.5948486328124
summarycsfstdv104.30791473388672
summarygmk0.3687467951862957
summarygmmad56.20672607421875
summarygmmean635.278564453125
summarygmmedian633.8211669921875
summarygmn46464.0
summarygmp05540.4657165527343
summarygmp95736.3771209716797
summarygmstdv59.26784896850586
summarywmk1.025325267806445
summarywmmad39.179012298583984
summarywmmean996.9541015625
summarywmmedian1000.0075073242188
summarywmn184413.0
summarywmp05918.3149536132812
summarywmp951062.257763671875
summarywmstdv43.931888580322266
tpmoverlapcsf0.20840556919574738
tpmoverlapgm0.5322839617729187
tpmoverlapwm0.5409848690032959
wm2max0.5487503632275005

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumd12623acfe389ea99ac971eae7c15435
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.