MRIQC: individual T1w report

Summary

Subject ID: 046_ExercisePre.
Date and time: 2018-05-06, 22:49.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2604841521022162
cnr			4.886088488643636
efc			0.5933687471915365
fber			92.69485473632812
fwhm	avg		3.8770433333333334
fwhm	x		3.76018
fwhm	y		4.15899
fwhm	z		3.71196
icvs	csf		0.20816101261274042
icvs	gm		0.4687940468118374
icvs	wm		0.3230449405754222
inu	med		1.072716474533081
inu	range		0.2883013129234313
qi	1		0.0
qi	2		0.003508690176583704
rpve	csf		23.729655303968084
rpve	gm		11.792131809147955
rpve	wm		19.575199555041113
size	x		180
size	y		256
size	z		256
snr	csf		3.0241827441359304
snr	gm		10.694066976017453
snr	total		12.160289226561673
snr	wm		22.76261795953164
snrd	csf		16.249254440864828
snrd	gm		32.64870607274378
snrd	total		33.46975292491999
snrd	wm		51.51129826115136
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.7042222919501611
summary	bg	mad	12.718400001525879
summary	bg	mean	52.81952667236328
summary	bg	median	51.94453430175781
summary	bg	n	2709505.0
summary	bg	p05	33.18787384033203
summary	bg	p95	75.64781188964842
summary	bg	stdv	13.191526412963867
summary	csf	k	-0.02784417927117122
summary	csf	mad	114.75675201416016
summary	csf	mean	317.73236083984375
summary	csf	median	315.4526672363281
summary	csf	n	24373.0
summary	csf	p05	157.182080078125
summary	csf	p95	485.5948486328124
summary	csf	stdv	104.30791473388672
summary	gm	k	0.3687467951862957
summary	gm	mad	56.20672607421875
summary	gm	mean	635.278564453125
summary	gm	median	633.8211669921875
summary	gm	n	46464.0
summary	gm	p05	540.4657165527343
summary	gm	p95	736.3771209716797
summary	gm	stdv	59.26784896850586
summary	wm	k	1.025325267806445
summary	wm	mad	39.179012298583984
summary	wm	mean	996.9541015625
summary	wm	median	1000.0075073242188
summary	wm	n	184413.0
summary	wm	p05	918.3149536132812
summary	wm	p95	1062.257763671875
summary	wm	stdv	43.931888580322266
tpm	overlap	csf	0.20840556919574738
tpm	overlap	gm	0.5322839617729187
tpm	overlap	wm	0.5409848690032959
wm2max			0.5487503632275005

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	d12623acfe389ea99ac971eae7c15435
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.